Results

GENEGUT Publications

Below is a list of all accepted GENEGUT scientific publications available to date.

Scatter-Free UV–Visible Spectroscopy for Accurate and Precise RNA Quantification in Complex RNA Nanoparticle Formulations.

Aida López Espinar, Eric C. Le Ru, Parveen Kumar, Francisca Soares, Caitriona M. O’Driscoll, Brendan L. Darby, and Piotr S. Kowalski
Analytical Chemistry 2025 97 (45), 24928-24935

DOI: 10.1021/acs.analchem.5c03644

Next generation capsules: emerging technologies in capsule fabrication and targeted oral drug delivery.

Elisa Millet, Joseph P O’Shea, Brendan T Griffin, Camille Dumont, Vincent Jannin

European Journal of Pharmaceutical Sciences, Volume 214, 1 November 2025

DOI: https://doi.org/10.1016/j.ejps.2025.107277

Curious what our science means in everyday terms? Our From Lab to Life blog breaks down complex research into easy-to-read insights. Read the “More Than a Pill: How Smart Capsules Know Where to Release Medicine” blog post to learn more about this publication.

Evaluating Drug Absorption from Enteric Capsules in Pigs: Impact of Capsule Size on Gastric Emptying.

Sophia V. Hoffmann, Brendan T. Griffin, Vincent Jannin, Joseph P. O’Shea

European Journal of Pharmaceutical Sciences, 15 August 2025

DOI: https://doi.org/10.1016/j.ejps.2025.107237

Curious what our science means in everyday terms? Our From Lab to Life blog breaks down complex research into easy-to-read insights. Read the “Big vs. Small: How Capsule Size Affects Medicine in Pigs” blog post to learn more about this publication.

Establishment of a 3D multi-layered in vitro model of inflammatory bowel disease.
Bárbara Ferreira, Cecília Ferreira, Cláudia Martins, Rute Nunes, José das Neves, Catarina Leite-Pereira, Bruno Sarmento

Journal of Controlled Release, Volume 377, 10 January 2025, Pages 675-688

DOI: https://doi.org/10.1016/j.jconrel.2024.11.070.

Curious what our science means in everyday terms? Our From Lab to Life blog breaks down complex research into easy-to-read insights. Read the “Modeling IBD in vitro: a tool to foster innovative therapeutics translation” blog post to learn more about this publication.

State-of-the-art and future perspectives in ingestible remotely controlled smart capsules for drug delivery: A GENEGUT review. 

Sophia V. Hoffmann, Joseph P. O’Shea, Paul Galvin, Vincent Jannin, Brendan T. Griffin

European Journal of Pharmaceutical Sciences, Volume 203, 1 December 2024, 106911

DOI: https://doi.org/10.1016/j.ejps.2024.106911.

Curious what our science means in everyday terms? Our From Lab to Life blog breaks down complex research into easy-to-read insights. Read the “The Next Step in Drug Delivery: Smart Capsules” blog post to learn more about this publication.

Trends in 3D models of inflammatory bowel disease. 
Bárbara Ferreira, Andreia S. Barros, Catarina Leite-Pereira, Juliana Viegas, José das Neves, Rute Nunes, Bruno Sarmento

Biochimica et Biophysica Acta (BBA) – Molecular Basis of Disease, Volume 1870, Issue 3, 2024, 167042, ISSN 0925-4439,

DOI: https://doi.org/10.1016/j.bbadis.2024.167042.

GENEGUT Deliverables

GENEGUT continuously reports its results and progress to the European Commission. Some of the deliverable reports are public and made available for download here.

Deliverable 6.1 Project website

The deliverable D6.1 GENEGUT website, is part of WP6 – communication, dissemination and exploitation, and presents the GENEGUT project website, describing the main structure of the website, how it is set up and how it will be maintained throughout the project’s duration and for four years after the project end. The project website serves as a powerful tool to communicate, inform and raise awareness on the endeavours and progress of the project, enabling the GENEGUT consortium to easily reach out to all its stakeholders. 

Deliverable 6.3 Interim impact report I

The deliverable D6.3 Interim impact report I is part of WP6 – Communication, dissemination and exploitation. It presents an overview of all implemented communication and dissemination activities until M18 of the GENEGUT project, as well as an assessment of their contributions to the overall scientific, societal and economic/technological impact of the project. This first of two Interim impact reports also provides the basis for evaluating and re-assessing implemented strategies and potential measures for improvement.

GENEGUT Presentations

Members of the GENEGUT project continuesly participate in scientific conferences to present their latest progress. Below is the list of the oral presentations and scientific posters.

Date Type of Presentation Title Presenter
11.09.2023Presentation, talk, panel discussionNew generation of cyclodextrins: application in geneTamas Sohajda
21.09.2023Poster presentationCyclodextrin-based nanoparticles as delivery vectors for RNA-therapy for Ileal Crohn’s DiseaseFrancisca Soares
21.09.2023Poster presentationIdentification of Polymeric Nanoparticles for Oral Delivery of RNA for the treatment of ileal Crohn’s diseaseMiguel Ramôa
31.10.2023Poster presentationIdentification of Polymeric Nanoparticles for Oral Delivery of RNA for the treatment of ileal Crohn’s diseaseMiguel Ramôa
27.11.2023Poster presentationOrganoid-based models for studying oral RNA therapeutics in Crohn’s DiseaseSon Vo Dinh
29.11.2023Poster presentationIntestinal organoid models for studying oral RNA therapeutics in Crohn’s DiseaseDinh Son Vo, Per Artursson, Madlen Hubert
29.11.2023Oral PresentationLipid nanoparticles for oral therapeutics delivery and cellular interactionsMadlen Hubert
20.03.2024Oral PresentationOral delivery and intestinal targeting of therapeutic nucleic acidsCaitriona O'Driscoll
26.04.2024Poster presentationIntestinal organoids – a potential screening tool for advanced drug delivery systemsDinh Son Vo, Ana Lopes, Kajsa Björner, Johan Vessby, Mikael Sellin, Per Artursson, Madlen Hubert
14.06.2024Oral PresentationModified cyclodextrins as a platform for oral delivery of therapeutic nucleic acids to treat inflammatory bowel disease (IBD)Caitriona O'Driscoll
12.07.2024Poster presentationEstablishment of a 3D Multi-layered In vitro Model of Inflammatory Bowel DiseaseClaudia Martins
27.08.2024Oral PresentationInfluence of Capsule Size on Gastric Emptying of Capsugel® Enprotect® Capsules in Healthy Landrace PigsSophia V. Hoffmann, Joseph P. O‘Shea, Vincent Jannin, Brendan T. Griffin
27.08.2024Poster presentationDevelopment of Polymeric Nanoparticles for Oral Delivery of RNA as a Treatment for Ileal Crohn’s DiseaseMiguel Ramôa, Georgia Tsaridou, Aida López Espinar, Caitriona M. O’Driscoll, Piotr. S. Kowalski
10.09.2024Oral PresentationSynthesis of new amphiphilic cyclodextrin monomers and polymers and their application in gene therapyKristof Felegyi, Tamas Sohajda
11.09.2024Oral PresentationInnovative advances in non-viral delivery of RNA medicinesCaitriona O'Driscoll
13.09.2024Poster presentationProteomic analysis of intestinal organoids for advancing oral drug screening modelsDinh Son Vo, Alina Meyer, Ana Lopes, Kajsa Björner, Johan Vessby, Mikael Sellin, Per Artursson, Madlen Hubert
24.10.2024Poster presentationIntestinal organoids: a clinically relevant screening tool for advanced drug delivery systemsDinh Son Vo, Alina Meyer, Ana Lopes, Kajsa Björner, Johan Vessby, Mikael Sellin, Per Artursson, Madlen Hubert
01.12.2024Poster presentationCyclodextrins-Based Nanoparticles For Intestinal Delivery of RNAFrancisca Soares, Tsaridou, Felegyi, Malanga, Ramôa, Kowalski, O’Driscoll
12.12.2024Poster presentationEvaluating Adrenomedullin as a Target of Oral RNA-based Therapy for Ileal Crohn’s DiseaseKlara Martinovic Music, Ken Nally, Silvia Melgar
12.12.2024Poster presentationTargeted delivery of RNA-based therapeutics to the gut to modulate the JAK-STAT pathway in Crohn's DiseaseAman Saifi, Ken Nally, Silvia Melgar
23.01.2025Poster presentation3D human ileal organoids – a potential screening tool for advanced oral drug delivery systemsDinh Son Vo, Alina Meyer, Ana Lopes, Kajsa Björner, Johan Vessby, Mikael Sellin, Per Artursson, Madlen Hubert
23.01.2025Oral presentation3D human intestinal organoids: a predictive screening tool for oral drug deliveryMadlen Hubert
04.03.2025Oral PresentationIntestinal organoids - a potential screening tool for advanced oral drug delivery systemsDinh Son Vo, Alina Meyer, Foteini Tzioufa, Jens Eriksson, Ana Lopes, Kajsa Björner, Johan Vessby, Mikael Sellin, Per Artursson, Madlen Hubert
15.05.2025Poster presentationEvaluating Adrenomedullin as a Target of Oral RNA-based Therapy for Ileal Crohn’s DiseaseKlara Martinovic Music, Ken Nally, Silvia Melgar
27.05.2025Poster presentationAdvancing Precision Modeling: A Microengineered Osteosarcoma-on-Chip ApproachCatarina Leite Pereira
06.07.2025Oral PresentationSTRUCTURE-ACTIVITY RELATIONSHIP OF MODIFIED AMPHIPHILIC CATIONIC CYCLODEXTRINS FOR RNA DELIVERYMilo Malanga
14.07.2025Participation & knowledge sharingTech Session IV: Alternative Methods to Animal Testing IBruno Sarmento
15.07.2025Presentation, talk, panel discussionSynthesis, characterisation and application of cyclodextrin derivatives functionalised with natural amino acidsDaniel Bisericaru
17.07.2025Oral PresentationChallenges and Innovations in the Preclinical Evaluation of Targeted Oral Dosage FormsJoseph O'Shea
03.09.2025Poster presentationSimulating Crohn’s Disease Conditions: In Vitro Evaluation of Budesonide Release from Marketed FormulationsSophia V. Hoffmann, Desmond Lee, Joseph P. O'Shea, Vincent Jannin, Brendan T. Griffin
04.09.2025Oral PresentationAssessing Impact of Lyophilization on Stability and Bioactivity of RNA NanoparticlesSophia V. Hoffmann, Miguel Ramôa, Francisca Soares, Piotr S. Kowalski, Caitriona M. O’Driscoll, Joseph P. O'Shea, Brendan T. Griffin
12.09.2025Oral PresentationGreener rings: Sustainable strategies for cyclodextrin derivativesMilo Malanga
04-07.10.2025Poster presentationIn vitro evaluation of Adrenomedullin as a Target for Oral RNA-based Therapy for Ileal Crohn’s DiseaseKlara Martinovic Music, Ken Nally, Silvia Melgar

Ribonucleic acid (RNA)-based drugs showed the potential for treating wide range of diseases. Their successful clinical use depends on developing complex nanoparticle (NP) formulations made from diverse biomaterials. Accurately quantifying total RNA concentration in complex formulations is challenging, often requiring expensive, low-throughput methods or fluorescence-based assays like RiboGreen that rely on effective NP disruption. This study evaluates scatter-free absorption spectroscopy (SFAS), a UV/Visible method that removes light scattering from NP components and enables accurate total RNA quantification in intact NPs. To validate SFAS, we employed diverse RNA formulations, including lipid NPs, polymer and dendrimer hybrid lipid NPs, and cyclodextrin nanocomplexes, which exhibit physicochemical characteristics that can interfere with RNA quantification. Data obtained with SFAS were compared to fluorescent-based assays utilizing RiboGreen and SYTO 9 dyes, which bind to RNA in free or encapsulated forms, respectively. SFAS demonstrated superior accuracy, precision, and reproducibility than fluorescence-based methods across all formulations, particularly those showing resistance to disruption. RNA quantification by SFAS was less influenced by NP composition and measurement conditions, unlike the RiboGreen and SYTO 9. These findings demonstrate SFAS as a versatile and reliable alternative to fluorescence-based assays for accurate quantification of total RNA concentration in complex RNA NP formulations.

Capsule-based drug delivery has undergone significant advancements, offering enhanced protection for active pharmaceutical ingredients (APIs) and enabling precise, site-specific release in the gastrointestinal (GI) tract. Recent innovations such as enteric coatings, dual-layer encapsulation (double-dipping), and advanced polymer formulations have expanded the functional capabilities of capsules, offering opportunities to enhance bioavailability and stability of sensitive molecules like peptides, proteins, and RNA-based therapies. Additionally, cutting-edge manufacturing techniques—including injection molding and 3D printing—are facilitating the production of customized capsules with controlled release profiles, thereby minimizing systemic side effects and enhancing patient adherence.
This review examines the technological advancements from single-layer to double-layer capsules, a crucial development to achieve enteric properties and enhance drug protection against degradation in gastric fluids. We explore key capsule manufacturing technologies, including double-dipping, enteric coating, and emerging approaches such as 3D printing and injection molding, which offer new possibilities for precise drug delivery and formulation flexibility. By integrating these advancements, capsule technology continues to evolve as a promising platform for personalized and targeted oral drug delivery. Future research will focus on overcoming production constraints and further refining capsule design to optimize therapeutic efficacy across a broader range of gastrointestinal and systemic diseases.

The development of novel drug delivery systems is contingent on the availability of reliable preclinical animal models and their translatability to humans. The pig model is of particular interest in predicting dosage form-related factors in humans based on similar anatomical and physiological features. However, it has been reported that large non-disintegrating capsules show prolonged retention in the porcine stomach, which questions the utility of the pig model for exploring enteric dosage forms. The present study examined the gastric emptying of gastro-resistant Capsugel® Enprotect® capsules (sizes 0, 1, and 2). The prokinetic agent metoclopramide was evaluated for its potential to enhance gastric emptying. Paracetamol and caffeine were used as marker drugs. Pharmacokinetic parameters were employed to assess gastric emptying, with blood samples collected over a 24-hour period. The study demonstrated that Capsugel® Enprotect® capsules were cleared from the stomach, with mean absorption times ranging from 3.9 to 8.1 hours. There was no statistically significant difference between the tested capsule sizes. However, a trend toward slower gastric emptying with increasing capsule size was observed. In general, gastric emptying appeared to be slower than what is typically seen in humans, which limits the direct translatability of the findings. The administration of metoclopramide did not accelerate gastric emptying or improve consistency between individuals. Although the capsules emptied from the stomach more quickly than large monolithic dosage forms, the longer gastric residence compared to humans remains a limitation and should be taken into account when interpreting and extrapolating the data.

Crohn’s Disease and Ulcerative Colitis, the main types of Inflammatory Bowel Disease (IBD), are life-threatening gastrointestinal disorders with no definitive cure. The establishment of biorelevant in vitro models that closely recapitulate the IBD microenvironment is of utmost importance to validate newly developed IBD therapies. To address the existing flaws in the current representation of the IBD microenvironment, we propose a novel three-dimensional (3D) in vitro model comprising a multi-layered gastrointestinal tissue with functional immune responses under inflammatory conditions. The multi-layered architecture consists of a lamina propria-like hydrogel with human intestinal fibroblasts (HIF), supporting an epithelial layer composed of Caco-2 and HT29-MTX cells, along with an endothelial layer surrogating the absorptive capillary network. A collagen-alginate composite matrix was optimized for the lamina propria-like hydrogel, preserving HIF metabolic activity and morphology over time. To achieve immune competence, pre-differentiated THP-1-derived macrophages were incorporated into the epithelial barrier. Inflammation was induced through the optimization of an inflammatory cocktail consisting of E. coli O111:B4 lipopolysaccharide combined with a specialized cytokine array (tumor necrosis factor-α, interferon-γ, and interleukin-1β). This inflammation-inducing stimulus led to a significant upregulation of pro-inflammatory cytokines commonly associated with IBD onset, including CCL20, IL-6, CXCL9 and CXCL10. Altogether, this 3D in vitro model has the potential to accelerate the drug development pipeline by providing reliable permeability and efficacy outputs for emerging therapies, reducing unnecessary animal experiments. Moreover, it offers a valuable in vitro platform for studying IBD pathophysiology and cell interplay dynamics.

An emerging concern globally, particularly in developed countries, is the rising prevalence of Inflammatory Bowel Disease (IBD), such as Crohn’s disease. Oral delivery technologies that can release the active therapeutic cargo specifically at selected sites of inflammation offer great promise to maximise treatment outcomes and minimise off-target effects. Therapeutic strategies for IBD have expanded in recent years, with an increasing focus on biologic and nucleic acid-based therapies. Reliable site-specific delivery in the gastrointestinal (GI) tract is particularly crucial for these therapeutics to ensure sufficient concentrations in the targeted cells. Ingestible smart capsules hold great potential for precise drug delivery. Despite previous unsuccessful endeavours to commercialise drug delivery smart capsules, the current rise in demand and recent advancements in component development, manufacturing, and miniaturisation have reignited interest in ingestible devices. Consequently, this review analyses the advancements in various mechanical and electrical components associated with ingestible smart drug delivery capsules. These components include modules for device localisation, actuation and retention within the GI tract, signal transmission, drug release, power supply, and payload storage. Challenges and constraints associated with previous capsule design functionality are presented, followed by a critical outlook on future design considerations to ensure efficient and reliable site-specific delivery for the local treatment of GI disorders.

Inflammatory bowel disease (IBD) encompasses a set of chronic inflammatory conditions, namely Crohn’s disease and ulcerative colitis. Despite all advances in the management of IBD, a definitive cure is not available, largely due to a lack of a holistic understanding of its etiology and pathophysiology. Several in vitro, in vivo, and ex vivo models have been developed over the past few decades in order to abbreviate remaining gaps. The establishment of reliable and predictable in vitro intestinal inflammation models may indeed provide valuable tools to expedite and validate the development of therapies for IBD. Three-dimensional (3D) models provide a more accurate representation of the different layers of the intestine, contributing to a stronger impact on drug screening and research on intestinal inflammation, and bridging the gap between in vitro and in vivo research. This work provides a critical overview on the state-of-the-art on existing 3D models of intestinal inflammation and discusses the remaining challenges, providing insights on possible pathways towards achieving IBD mimetic models. We also address some of the main challenges faced by implementing cell culture models in IBD research while bearing in mind clinical translational aspects.